The University of Mississippi Medical Center

Analytical Ultracentrifugation Reading List:

Dr. J. J. Correia, Director

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["Trust me, this stuff isn't that hard to understand".]

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Analytical Ultracentrifuge Facility Publications.

Introduction

K.E. van Holde (1985) Physical Biochemistry, Chap 5, p 110-136

Cantor and Schimmel (1980) Biophysical Chemsitry, Part II, Chap 11, p 591-641

Overview of Purity and MW Measurements

D.G. Rhodes and T.M. Laue (1990) Methods Enzy. 182: 555-565

T.M. Laue and D.G. Rhodes (1990) Methods Enzy. 182: 566-587

Boundary Analysis:

K.E. van Holde and W.O. Weischet (1978) Biopoymers 17:1387-1403

W.F. Stafford III (1992) Anal. Biochem. 203: 295-301

Correia, J. J. Sedimentation velocity data analysis methods: what, when and why? CHEMTRACTS - Biochemistry and Molecular Biology, 11: 944-948, 1998.

Sedmentation Study of small DNA fragments

R.T. Kovacic and K.E. van Holde (1977) Biochemistry 16:1490-1498

Sedimentation Velocity of monomer-n-mer System

R.P Frigon and S.N. Timasheff (1975) Biochemistry 14:4559-4566

R.P Frigon and S.N. Timasheff (1975) Biochemistry 14:4567-4573

Indefinite Self-Association, Ligand Mediated Self Association

Lobert, S., Frankfurter, A., and Correia, J.J. Binding of vinblastine to phosphocellulose-purified and beta-Class III tubulin: The role of nucleotides and beta-tubulin isotypes. Biochemistry, 34: 8050-8060, 1995.

Lobert, S., Vulevic, B., and Correia, J.J. Interaction of vinca alkaloids with tubulin: A comparison of vinblastine, vincrisitine, and vinorelbine. Biochemistry, 35: 6806-6814, 1996.

Vulevic, B., Lobert, S. and Correia, J.J. Role of Guanine Nucleotides in the Vinblastine-Induced Self-Association of Tubulin: Effects of GMPCPP and GMPCP. Biochemistry 36: 12828-12835, 1997.

Correia, J. J. The Analysis of Weight Average Sedimentation Data. Methods in Enzymology, Numerical Computer Methods Part C, 321:81-100, 2000.

Kirkwood Theory

Reviews

K.E. van Holde (1975) in Proteins Vol 1, Chap. 4 pp. 225-291

D.C. Teller (1973) Methods in Enzymol. vol 27D, 346-441

Sedimentation Equilibrium - Methods, Analysis & Examples

D.A Yphantis (1964) Biochemistry 3:297-317

M.L. Johnson, J.J. Correia, D.A. Yphantis and H.R. Halvorsen (1981) Biophys. J. 36:575-588

K.E. Van Holde Fractions 1967 No 1 p 1-10

Correia, J.J., Gilbert, S.P., Moyer, M.L. and Johnson, K.A. Sedimentation studies on the Kinesin head domain constructs K401, K366, and K341. Biochemistry 33:4898-4907, 1995.

Estimation of vbar

J.C. Lee and S.N. Timasheff (1974) Biochemistry 13:258-265

V. Prakash and S.N. Timasheff (1981) Anal. Biochem. 117:330-335

done for you in sednterp, available through RASMB

Solvent Equilibration

E.F. Casassa and H. Eisenberg (1964) Adv. Protein Chem. 19:287-395

Drug/Ligand Binding

H.K. Schachman and S.J. Edelstein (1966) Biochemistry 5: 2681-2705

I.Z. Steinberg and H.K. Schachman (1966) Biochemistry 5: 3728-3747

Density/Viscosity Data

International Critical Tables vol III and vol V (Ref Q 199 N274)

G. Cohen and H. Eisenberg (1968) Biopolymers 6: 1077-1100.

T.M. Laue et al. (1992) Computer-Aided Interpretation of Analytical Sedimentation Data for Proteins pp 90-125 in "Analytical Ultracentrifugation in Biochemistry and Polymer Sciences" (S.E. Harding, A.J. Rowe and J.C. Horton, eds.)

done for you in sednterp, available through RASMB, for a limited number of buffer components

Data Analysis

P.R. Bevington "Data Reduction and Error Analysis for the Physical Sciences"

Magar E. Magar "Data Analysis in Biochemistry and Biophysics"

J.R. Taylor "An Introduction to Error Analysis"

Press et al. "Numerical Recipes" (Fortran & Pascal or C version)

M.L. Johnson and S.G. Fraser (1985) Methods in Enzymology 117: 301-342.

G. Henderson (1988) J. Chem. Ed. 65: 1001-1003.

L. Endrenyi and F.H.F. Kwong (1973) Acta Biol. Med. Germ. 31: 495-505.

K.J. Ellis and R.G. Duggleby (1978) Biophys. J. 171: 513-517

M.S. Lewis and G.D. Knott (1976) Biophys. Chem. 5: 171-183.

"Self-Associating Systems in the Analytical Ultracentrifuge" Beckman

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